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Alignment Quick Tips

  • Pairwise: Paste two sequences and click Align.
  • MSA: Use FASTA for multiple sequences and align all.
  • Variants are displayed as SNP / Insertion / Deletion with positions.
Pairwise Sequence Alignment

Enter sequence to see character count

📝 Accepted: A/T/C/G/U/N, FASTA headers (starting with >), whitespace and numbers ignored.

Enter sequence to see character count

📝 Accepted: A/T/C/G/U/N, FASTA headers (starting with >), whitespace and numbers ignored.